Lysosome-Related Organelles Orchestrate Guanine Crystal Formation in Pigment Cells

Research output: Contribution to journalArticle

Abstract

Iridosomes, the guanine crystal-forming organelles of pigment-producing iridophores, are among the most versatile, visually striking yet mechanistically uncharacterized organelles in vertebrate biology. Lysosome-related organelles (LROs) support cell type-specific functions by adapting endolysosomal pathways for specialized roles. Here, we show that iridosomes represent a previously unrecognized subtype of LROs. Using transcriptomic profiling of zebrafish iridophores, CRISPR-Cas9-mediated gene disruption, and cryogenic transmission electron microscopy, we define the molecular program underlying iridosome biogenesis. Iridosomes have evolved unique adaptations for crystal growth while retaining core features of other LROs. Key regulators, including RAB32a, AP3M2, and HPS5, are essential for crystal formation, with gene knockouts causing reduced crystal number, altered morphology, and distinct maturation defects. We further identify hallmark LRO features in iridosomes, including intraluminal vesicles and pH-regulated developmental transitions. Cross-species transcriptomic analysis confirms that iridosomes share an LRO signature across vertebrates, including teleost fish and reptiles, suggesting ancient evolutionary origins. These findings establish iridosomes as crystalline LROs and as a model for investigating how cells construct structurally specialized organelles through coordinated trafficking, acid-base regulation, and crystallization, with implications for LRO evolution and human disease.Competing Interest StatementThe authors have declared no competing interest.European Research Council- Starting Grant, 101077470Israel Science Foundation, https://ror.org/04sazxf24, 691/22
Original languageEnglish
JournalBioRxiv
DOIs
Publication statusIn preparation - 6 Jan 2026

Funding

We thank Yuval Elazari (Crown Genomics Institute, Nancy and Stephen Grand Israel National Center for Personalized Medicine, Weizmann Institute of Science) for assistance with RNA-seq data processing. We are grateful to Ziv Porat (Life Sciences Core Facilities, Weizmann Institute of Science) for his guidance in developing and optimizing the FACS sorting protocol. We thank Neta Varsano (Department of Chemical Research Support, Weizmann Institute of Science) for her contributions to illustration and figure layout design. We also thank Ron Rotkopf (Life Sciences Core Facilities, Weizmann Institute of Science) for his support with statistical analysis and data interpretation. This work was supported by an ERC Starting Grant (Grant number: 101077470, “CRYSTALCELL”) and by the Israel Science Foundation (grant No. 691/22) awarded to D.G. Electron microscopy studies were conducted at the Irving and Cherna Moskowitz Center for Nano and Bio-Nano Imaging at the Weizmann Institute of Science. R.D. is a fellow of the Ariane de Rothschild Women Doctoral Program.

Fingerprint

Dive into the research topics of 'Lysosome-Related Organelles Orchestrate Guanine Crystal Formation in Pigment Cells'. Together they form a unique fingerprint.

Cite this