Faculty of Biochemistry

2024

Osteoclast Methods in Protein Phosphatase Research

Reuven, N., Barnea-Zohar, M. & Elson, A., 2024, Protein Tyrosine Phosphatases: Methods and Protocols. Thevenin, D. & Muller, J. P. (eds.). Humana Press, p. 57-79 23 p. (Methods in Molecular Biology, Vol. 2743).

Research output: Chapter in Book/Report/Conference proceeding › Chapter › peer-review

Tackling Tissue Macrophage Heterogeneity by SplitCre Transgenesis

Boura-Halfon, S., Haffner-Krausz, R., Ben-Dor, S., Kim, J. S. & Jung, S., 2024, Tissue-Resident Macrophages: Methods and Protocols. Mass, E. (ed.). Humana Press, p. 481-503 23 p. (Methods in Molecular Biology, Vol. 2713).

Research output: Chapter in Book/Report/Conference proceeding › Chapter › peer-review

2023

Introduction: An overview and with acknowledgements to seminal, historical discoveries in the field

Tran, T. S. & Yaron, A., 30 Oct 2023, Wiring the Nervous System: Mechanisms of Axonal and Dendritic Remodelling in Health and Disease. River Publishers, p. xvii-xxi

Research output: Chapter in Book/Report/Conference proceeding › Chapter › peer-review

Life’s Emergence by Protocellular Mutually Catalytic Networks

Yaniv, R. & Lancet, D., 2023, Guidebook for Systems Applications in Astrobiology. p. 239-263 25 p.

Research output: Chapter in Book/Report/Conference proceeding › Chapter › peer-review

Quantifying Golgi Apparatus Fragmentation Using Imaging Flow Cytometry

Wortzel, I. & Porat, Z., 2023, Methods in Molecular Biology. Humana Press, p. 173-184 12 p. (Methods in Molecular Biology, Vol. 2635).

Research output: Chapter in Book/Report/Conference proceeding › Chapter › peer-review

1 Citation (Scopus)

Synchronization to Visualization: Dissecting Myogenesis and Regeneration Using Correlative Light and Electron Microscopy (CLEM)

Khan, S., Scher, N. & Avinoam, O., 30 Nov 2023, Bioimaging in Tissue Engineering and Regeneration: Advanced Microscopy and Preclinical Imaging. Walter, A., Slezak, P., Mueller, R., Kerckhofs, G. & Bajoghli, B. (eds.). Cham, p. 1-16 16 p. (Reference Series in Biomedical Engineering).

Research output: Chapter in Book/Report/Conference proceeding › Chapter › peer-review

The Emerging Roles of LIS1 Biomechanics in Cellular and Cortical Homeostasis

Kshirsagar, A. & Reiner, O., 1 Jan 2023, Neocortical Neurogenesis in Development and Evolution. Huttner, W. (ed.). Wiley-Hindawi, p. 365-396 32 p.

Research output: Chapter in Book/Report/Conference proceeding › Chapter › peer-review

2022

An Integrated View of Diatom Interactions

Vincent, F. & Bowler, C., 12 May 2022, The Molecular Life of Diatoms. p. 59-86 28 p.

Research output: Chapter in Book/Report/Conference proceeding › Chapter › peer-review

2 Citations (Scopus)

An Ocean of Signals: Intracellular and Extracellular Signaling in Diatoms

Graff van Creveld, S., Mizrachi, A. & Vardi, A., 12 May 2022, The Molecular Life of Diatoms. p. 641-678 38 p.

Research output: Chapter in Book/Report/Conference proceeding › Chapter

2 Citations (Scopus)

Application of Restriction Free (RF) Cloning in Circular Permutation

Bandyopadhyay, B. & Peleg, Y., 22 Jun 2022, Directed Evolution. p. 149-163 (Methods in Molecular Biology, Vol. 2461).

Research output: Chapter in Book/Report/Conference proceeding › Chapter

Diffusion Tensor Imaging (DTI) of the Breast

Sigmund, E. E., Furman-Haran, E., Baltzer, P. A. T. & Partridge, S. C., Jan 2022, Diffusion MRI of the Breast. Iima, M., Partridge, S. C. & Le Bihan, D. (eds.). Elsevier, p. 144-161 18 p.

Research output: Chapter in Book/Report/Conference proceeding › Chapter › peer-review

1 Citation (Scopus)

Imaging of Extracellular Vesicles Derived from Plasmodium falciparum–Infected Red Blood Cells Using Atomic Force Microscopy

Rosenhek-Goldian, I., Abou Karam, P., Regev-Rudzki, N. & Rojas, A., 27 Jul 2022, Malaria Immunology. p. 133-145 13 p. (Methods in Molecular Biology, Vol. 2470).

Research output: Chapter in Book/Report/Conference proceeding › Chapter

2 Citations (Scopus)

Surface-Induced Dissociation for Protein ComplexProtein complexes Characterization

Harvey, S. R., Ben-Nissan, G., Sharon, M. & Wysocki, V. H., 4 Jun 2022, Proteoform Identification. p. 211-237 26 p. (Methods in Molecular Biology, Vol. 2500).

Research output: Chapter in Book/Report/Conference proceeding › Chapter

3 Citations (Scopus)

The GeneCards Suite

Safran, M., Rosen, N., Twik, M., BarShir, R., Stein, T. I., Dahary, D., Fishilevich, S. & Lancet, D., 1 Jan 2022, Practical Guide to Life Science Databases. Springer Singapore, p. 27-56 30 p.

Research output: Chapter in Book/Report/Conference proceeding › Chapter

Open Access

219 Citations (Scopus)

2021

50 Shades of CLEM: How to choose the right approach for you

Scher, N. & Avinoam, O., 2021, Correlative Light and Electron Microscopy IV. Vol. 162. p. 1-11 (Methods in Cell Biology).

Research output: Chapter in Book/Report/Conference proceeding › Chapter

6 Citations (Scopus)

A Lipidomics View of Circadian Biology

Aviram, R., Wang, C., Han, X. & Asher, G., 2021, Circadian Clocks: Methods and Protocols. Brown, S. A. (ed.). p. 157-168 12 p. (Methods in molecular biology (Clifton, N.J.), Vol. 2130).

Research output: Chapter in Book/Report/Conference proceeding › Chapter

2 Citations (Scopus)

Carbon Allocation Dynamics in Mediterranean Pines Under Stress

Klein, T., 13 Oct 2021, Pines and Their Mixed Forest Ecosystems in the Mediterranean Basin. p. 117-128 12 p. (Managing Forest Ecosystems).

Research output: Chapter in Book/Report/Conference proceeding › Chapter

Immunofluorescent Staining of Adult Murine Paraffin-Embedded Skeletal Tissue

Felsenthal, N. & Zelzer, E., 2021, Skeletal Development and Repair: Methods and Protocols. Hilton, M. J. (ed.). Humana Press, p. 337-344 8 p. (Methods in Molecular Biology, Vol. 2230).

Research output: Chapter in Book/Report/Conference proceeding › Chapter

1 Citation (Scopus)

mito-Ψ-Seq: A High-Throughput Method for Systematic Mapping of Pseudouridine Within Mitochondrial RNA

Sas-Chen, A., Nir, R. & Schwartz, S., 2021, Mitochondrial Gene Expression: Methods and Protocols. Minczuk, M. & Rorbach, J. (eds.). Humana Press, p. 103-115 13 p. (Methods in Molecular Biology, Vol. 2192).

Research output: Chapter in Book/Report/Conference proceeding › Chapter

1 Citation (Scopus)

New Technologies for Precision Plant Breeding

Filler-Hayut, S., Melamed-Bessudo, C. & Levy, A. A., 31 Aug 2021, (Published Online) Plant Biotechnology : Experience and Future Prospects. p. 39-49 11 p.

Research output: Chapter in Book/Report/Conference proceeding › Chapter

Production and analysis of human primordial germ cell–like cells

Mitsunaga, S., Shioda, K., Hanna, J. H., Isselbacher, K. J. & Shioda, T., 2021, Testicular Germ Cell Tumors: Methods and Protocols. p. 125-145 21 p. (Methods in Molecular Biology, Vol. 2195).

Research output: Chapter in Book/Report/Conference proceeding › Chapter

3 Citations (Scopus)

Production of recombinant venom peptides as tools for ion channel research

Saikia, C., Ben-Nisan, G., Reuveny, E. & Karbat, I., 1 Jan 2021, Ion Channels: Channel Chemical Biology, Engineering, and Physiological Function. p. 169-201 (Methods in Enzymology, Vol. 654).

Research output: Chapter in Book/Report/Conference proceeding › Chapter

5 Citations (Scopus)

The Success of Good Old and Highly Specific Separation Method in the Isolation of Bioactive Proteins: From Bench to Bedside

Novick, D., 26 Aug 2021, (Published Online) New Innovations in Chemistry and Biochemistry, v2. p. 59-63 6 p.

Research output: Chapter in Book/Report/Conference proceeding › Chapter

Use of iPSC-derived brain organoids to study human brain evolution

Reiner, O., Sapir, T. & Parichha, A., 2021, Recent Advances in iPSC Technology. Elsevier, p. 157-177 21 p. (Advances in Stem Cell Biology, Vol. 5).

Research output: Chapter in Book/Report/Conference proceeding › Chapter

1 Citation (Scopus)

2020

A protocol for non-biased identification of RNAs transferred between heterologous mammalian cell types using rna tagging, cell sorting, and sequencing

Dasgupta, S. & Gerst, J. E., 2020, RNA Tagging : Methods and protocols. Heinlein, M. (ed.). Humana Press, p. 195-214 20 p. (Methods in Molecular Biology, Vol. 2166).

Research output: Chapter in Book/Report/Conference proceeding › Chapter

2 Citations (Scopus)

Genetic defects of autophagy linked to disease

Fraiberg, M. & Elazar, Z., 2020, Autophagy in health and disease. Martinez, AB. & Galluzzi, L. (eds.). Academic Press Inc., p. 293-323 31 p. (Progress in Molecular Biology and Translational Science, Vol. 172).

Research output: Chapter in Book/Report/Conference proceeding › Chapter

11 Citations (Scopus)

Lignin-degrading fungi

Dosoretz, C. G., Salame, T. M. & Hadar, Y., 2020, AccessScience. New York: Mcgraw Hill

Research output: Chapter in Book/Report/Conference proceeding › Chapter › peer-review

Recent Advances in the Applications of Metal-Ligand Cooperation via Dearomatization and Aromatization of Pincer Complexes

Kumar, A. & Milstein, D., 24 Dec 2020, Metal-Ligand Co-operativity. p. 1-23 23 p. (Topics in Organometallic Chemistry).

Research output: Chapter in Book/Report/Conference proceeding › Chapter

7 Citations (Scopus)

The Role of HSF1 and the Chaperone Network in the Tumor Microenvironment

Grunberg, N., Levi-Galibov, O. & Scherz-Shouval, R., 16 Apr 2020, HSF1 and Molecular Chaperones in Biology and Cancer. p. 101-111 11 p. (Advances in Experimental Medicine and Biology, Vol. 1243).

Research output: Chapter in Book/Report/Conference proceeding › Chapter

2 Citations (Scopus)

2019

A Stroll Down the CerS Lane

Zelnik, I. D., Rozman, B., Rosenfeld-Gur, E., Ben-Dor, S. & Futerman, A. H., 2019, Bioactive Ceramides in Health and Disease: Intertwined Roles of Enigmatic Lipids. Stiban, J. (ed.). Cham: Springer Basel AG, p. 49-63 15 p. (Advances in Experimental Medicine and Biology, Vol. 1159).

Research output: Chapter in Book/Report/Conference proceeding › Chapter

31 Citations (Scopus)

Cell-surface display of designer cellulosomes by Lactobacillus plantarum

Ben-David, Y., Morais, S., Stern, J., Mizrahi, I. & Bayer, E. A., 2019, Metabolons and Supramolecular Enzyme Assemblies. SchmidtDannert, C. & Quin, MB. (eds.). Academic Press Inc., Vol. 617. p. 241-263 23 p. (Methods in Enzymology, Vol. 617).

Research output: Chapter in Book/Report/Conference proceeding › Chapter

6 Citations (Scopus)

Detection of mRNA Transfer Between Mammalian Cells in Coculture by Single-Molecule Fluorescent In Situ Hybridization (smFISH)

Haimovich, G. & Gerst, J. E., 13 Aug 2019, (Published Online) Imaging Gene Expression : Methods and Protocols. Shav-Tal, Y. (ed.). New York, NY: Humana Press, p. 109-129 21 p. (Methods in Molecular Biology, Vol. 2038).

Research output: Chapter in Book/Report/Conference proceeding › Chapter

6 Citations (Scopus)

Hippo Pathway Regulation by Tyrosine Kinases

Reuven, N., Shanzer, M. & Shaul, Y., 2019, The Hippo Pathway : Methods and Protocols. p. 215-236 12 p. (Methods in molecular biology, Vol. 1893).

Research output: Chapter in Book/Report/Conference proceeding › Chapter

7 Citations (Scopus)

Structural mass spectrometry approaches to study the 20S proteasome

Ben-Nissan, G., Vimer, S., Tarnavsky, M. & Sharon, M., 1 Feb 2019, (Published Online) Ubiquitin-dependent Protein Degradation. Hochstrasser, M. (ed.). Academic Press Inc., Vol. 619. p. 179-223 45 p. (Methods in Enzymology, Vol. 619).

Research output: Chapter in Book/Report/Conference proceeding › Chapter

16 Citations (Scopus)

2018

A complete pipeline for generating a high-resolution LC-MS-Based reference mass spectra library

Shahaf, N., Aharoni, A. & Rogachev, I., 15 May 2018, (Published Online) Plant Metabolomics. António, C. (ed.). New York, NY: Humana Press, p. 193-206 14 p. (Methods in Molecular Biology, Vol. 1778).

Research output: Chapter in Book/Report/Conference proceeding › Chapter

2 Citations (Scopus)

Advanced cloning tools for construction of designer cellulosomes

Kahn, A., Bayer, E. A. & Moraïs, S., 1 Jun 2018, (Published Online) Cellulases: Methods and protocols. Lübeck, M. (ed.). Humana Press, p. 135-151 17 p. (Methods in Molecular Biology, Vol. 1796).

Research output: Chapter in Book/Report/Conference proceeding › Chapter

7 Citations (Scopus)

Biochemical Profiling of DMSP Lyases

Lei, L., Alcolombri, U. & Tawfik, D. S., 2018, Marine Enzymes and Specialized Metabolism - Part B. Moore, BS. (ed.). Academic Press Inc., Vol. 605. p. 269-289 21 p. (Methods in Enzymology, Vol. 605).

Research output: Chapter in Book/Report/Conference proceeding › Chapter

2 Citations (Scopus)

Evaluation of thermal stability of cellulosomal hydrolases and their complex formation

Kahn, A., Galanopoulou, A. P., Hatzinikolaou, D. G., Moraïs, S. & Bayer, E. A., 1 Jun 2018, (Published Online) Cellulases. Lübeck, M. (ed.). Humana Press, p. 153-166 14 p. (Methods in Molecular Biology, Vol. 1796).

Research output: Chapter in Book/Report/Conference proceeding › Chapter

2 Citations (Scopus)

Inequality and the Biosphere

Hamann, M., Berry, K., Chaigneau, T., Curry, T., Heilmayr, R., Henriksson, P. J. G., Hentati-Sundberg, J., Jina, A., Lindkvist, E., Lopez-Maldonado, Y., Nieminen, E., Piaggio, M., Qiu, J., Rocha, J. C., Schill, C., Shepon, A., Tilman, A. R., van den Bijgaart, I. & Wu, T., 2018, ANNUAL REVIEW OF ENVIRONMENT AND RESOURCES, VOL 43. Gadgil, A. & Tomich, TP. (eds.). Annual Reviews Inc., p. 61-83 23 p. (Annual Review of Environment and Resources, Vol. 43).

Research output: Chapter in Book/Report/Conference proceeding › Chapter

81 Citations (Scopus)

Integration of plant metabolomics data with metabolic networks: Progresses and challenges

Töpfer, N., Seaver, S. M. D. & Aharoni, A., 15 May 2018, (Published Online) Plant Metabolomics. António, C. (ed.). Humana Press, p. 297-310 14 p. (Methods in Molecular Biology, Vol. 1778).

Research output: Chapter in Book/Report/Conference proceeding › Chapter

10 Citations (Scopus)

Methodology involved in biotin-conjugated phospholipids, glycolipids, and gangliosides

Bayer, E. A. & Wilchek, M., 1 Jan 2018, Liposome Technology: Volume III: Targeted Drug Delivery and Biological Interaction. CRC Press, p. 127-135 9 p.

Research output: Chapter in Book/Report/Conference proceeding › Chapter › peer-review

Methods for discovery of novel cellulosomal cellulases using genomics and biochemical tools

Ben-David, Y., Dassa, B., Bensoussan, L., Bayer, E. A. & Moraïs, S., Jun 2018, Cellulases: Methods and Protocols. Lübeck, M. (ed.). Humana Press, p. 67-84 18 p. (Methods in Molecular Biology, Vol. 1796).

Research output: Chapter in Book/Report/Conference proceeding › Chapter

2017

Achievements and Challenges in Computational Protein Design

Samish, I., 2017, COMPUTATIONAL PROTEIN DESIGN. p. 21-94 74 p.

Research output: Chapter in Book/Report/Conference proceeding › Chapter

6 Citations (Scopus)

Harnessing the Profinity eXact™ System for Expression and Purification of Heterologous Proteins in E. coli

Peleg, Y., Prabahar, V., Bednarczyk, D. & Unger, T., 2017, Heterologous Gene Expression in E.coli: Methods and Protocols. Burgess-Brown, N. A. (ed.). New York, NY: Springer New York, p. 33-43 11 p. (Methods in Molecular Biology, Vol. 1586).

Research output: Chapter in Book/Report/Conference proceeding › Chapter

7 Citations (Scopus)

Localizing mRNAs encoding mitochondrial proteins in yeast by fluorescence microscopy and subcellular fractionation

Zabezhinsky, D., Sperber, H. & Gerst, J., 9 Mar 2017, (Published Online) Mitochondria: Practical Protocols. 2nd Edition ed. Humana Press, p. 197-216 20 p. (Methods in Molecular Biology, Vol. 1567).

Research output: Chapter in Book/Report/Conference proceeding › Chapter

Neuronal Roles of the Bicaudal D Family of Motor Adaptors

Budzinska, M., Wicher, K. B. & Terenzio, M., 2017, NEUROTROPHINS. p. 133-152 20 p.

Research output: Chapter in Book/Report/Conference proceeding › Chapter

6 Citations (Scopus)

Riboflavin, Ultraviolet Light, and the Photochemical Reaction

Marcovich, A. L. & Brandis, A., 2017, Corneal Cross-Linking. 2nd ed. Slack Incorporated, p. 27-32 6 p.

Research output: Chapter in Book/Report/Conference proceeding › Chapter

Runx3 in Immunity, Inflammation and Cancer

Lotem, J., Levanon, D., Negreanu, V., Bauer, O., Hantisteanu, S., Dicken, J. & Groner, Y., 2017, RUNX PROTEINS IN DEVELOPMENT AND CANCER. Groner, Y., Ito, Y., Liu, P., Neil, JC., Speck, NA. & VanWijnen, A. (eds.). Springer Singapore, p. 369-393 25 p. (Advances in experimental medicine and biology, Vol. 962).

Research output: Chapter in Book/Report/Conference proceeding › Chapter

31 Citations (Scopus)

The Framework of Computational Protein Design

Samish, I., 2017, COMPUTATIONAL PROTEIN DESIGN. p. 3-19 17 p.

Research output: Chapter in Book/Report/Conference proceeding › Chapter

1 Citation (Scopus)

2016

Emerging Role of Dysadherin in Metastasis

Dey, K., Garty, H. & Chakraborti, S., 2016, REGULATION OF MEMBRANE NA+-K+ ATPASE. p. 185-193 9 p. (Advances in Biochemistry in Health and Disease).

Research output: Chapter in Book/Report/Conference proceeding › Chapter

Faculty of Biochemistry

Research output

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